miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|74532215|gb|DT741066.1|DT741066 GATGATTCTCCAGTACCCTAAACTCTCTTCTTCTCAAAAAATTAACAATGGCTTCAATGACTACTGCTTTCACTTCTCAT
CTTTCTTCCAAAATCAAAACCCCTTTCTTAGATAACCAATCATCTTTCCATGTCACTCCATCTCGCATCCAACTCACTCG
TTCATCTTCCCCAAACACTCACATCACCATGTCTTCATCATCATCATCATCATCTTCATCTTATGATCTATCTTCCTTCA
AATTTGAACCAATTAAGGAATCCATTGTATCACGTGAGATGACTCGCAGATACATGATGGATATGATTACATATGCTGAC
ACTGATGTTGTTGTTGTTGGAGCAGGTTCAGCAGGTCTTTCTTGTGCTTATGAAATGAGCAAAAACCCTAACATCAACAT
CGCTATTATCGAACAATCTGTCAGTCCTGGTGGTGGTGCTTGGTTAGGTGGTCAGCTTTTTTCTGCCATGGTTGTTCGCA
AACCTGCTCACATCTTCCTTGATGAACTCGGTGTTGAATACGATGAACAAGACACCTATGTTGTTATCAAGCACGCTGCC
TTGTTTACATCCACAATCATGTCTAAGCTTTTGGCTAAACCAAATGTGAAACTTTTTAATGCTGTTGCTGCTGAGGATTT
GATCGTGAAAGAAGGTAAAGTTGCTGGGGTTGTCACAAATTGGGCTTTGGTTTCTATGAATCATGATACACAATCATGTA
TGGATCCAAATGTAATGGAAGCTAAGATTGTTGTCAGTTCTTGTGGCCATGATGGTCCTTTTGGTGCTACTGGTGTGAGA
GGCTGAGAGCATTGGAATGATTGATTCTGTTCCTGGTATGAAAGCTCTTGATATGATACTGCTGAGATGCTATTGTCAGA
TGACAGAGAATTG




Most similar to sp|O23787|THI4_CITSI

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|O23787|THI4_CITSI Thiazole biosynthetic enzyme, chloroplastic
           OS=Citrus sinensis GN=THI1 PE=2 SV=1
          Length = 356

 Score =  350 bits (899), Expect(2) = 3e-98
 Identities = 187/253 (73%), Positives = 198/253 (78%), Gaps = 2/253 (0%)
 Frame = +3

Query: 48  MASM-TTAFTSHLSSKIKTPFLDNQSSFHVTPSRIQLTRXXXXXXXXXXXXXXXXXXXXX 224
           MA+M +TAF   +SS     F    SSFH  P    L R                     
Sbjct: 1   MAAMASTAFAPSVSSTTNKLF---DSSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPP 57

Query: 225 XXXX-FKFEPIKESIVSREMTRRYMMDMITYADTDXXXXGAGSAGLSCAYEMSKNPNINI 401
                FKF+PIKESIVSREMTRRYM DMITYADTD    GAGSAGLSCAYE+SKNPNI I
Sbjct: 58  YDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQI 117

Query: 402 AIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGVEYDEQDTYVVIKHAALFTSTIM 581
           AIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELG++YDEQD YVVIKHAALFTSTIM
Sbjct: 118 AIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIM 177

Query: 582 SKLLAKPNVKLFNAVAAEDLIVKEGKVAGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSS 761
           SKLLA+PNVKLFNAVAAEDLIVK G+V GVVTNWALVSMNHDTQSCMDPNVMEAK+VVSS
Sbjct: 178 SKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSS 237

Query: 762 CGHDGPFGATGVR 800
           CGHDGPFGATGV+
Sbjct: 238 CGHDGPFGATGVK 250



 Score = 30.4 bits (67), Expect(2) = 3e-98
 Identities = 13/15 (86%), Positives = 14/15 (93%)
 Frame = +1

Query: 811 IGMIDSVPGMKALDM 855
           IGMI+ VPGMKALDM
Sbjct: 255 IGMIEEVPGMKALDM 269


>sp|Q38709|THI4_ALNGL Thiazole biosynthetic enzyme, chloroplastic
           OS=Alnus glutinosa GN=THI4 PE=2 SV=1
          Length = 352

 Score =  335 bits (860), Expect(2) = 2e-94
 Identities = 164/188 (87%), Positives = 176/188 (93%)
 Frame = +3

Query: 237 FKFEPIKESIVSREMTRRYMMDMITYADTDXXXXGAGSAGLSCAYEMSKNPNINIAIIEQ 416
           F F+PIKESIVSREMTRRYMMDMITYADTD    GAGS+GL C YE+SKNP++ +AIIEQ
Sbjct: 60  FTFDPIKESIVSREMTRRYMMDMITYADTDVVVVGAGSSGLVC-YELSKNPSVQVAIIEQ 118

Query: 417 SVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGVEYDEQDTYVVIKHAALFTSTIMSKLLA 596
           SVSPGGGAWLGGQLFS MVVRKPAH+FLDELG+EYDEQD YVVIKHAALFTSTIMSKLLA
Sbjct: 119 SVSPGGGAWLGGQLFSGMVVRKPAHLFLDELGIEYDEQDNYVVIKHAALFTSTIMSKLLA 178

Query: 597 KPNVKLFNAVAAEDLIVKEGKVAGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 776
           +PNVKLFNAVAAEDLIVK G+V GVVTNWALVSMNHDTQSCMDPNVMEAK+VVSSCGHDG
Sbjct: 179 RPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 238

Query: 777 PFGATGVR 800
           PFGATGV+
Sbjct: 239 PFGATGVK 246



 Score = 32.3 bits (72), Expect(2) = 2e-94
 Identities = 14/15 (93%), Positives = 15/15 (100%)
 Frame = +1

Query: 811 IGMIDSVPGMKALDM 855
           IGMID+VPGMKALDM
Sbjct: 251 IGMIDTVPGMKALDM 265


>sp|Q38814|THI4_ARATH Thiazole biosynthetic enzyme, chloroplastic
           OS=Arabidopsis thaliana GN=THI1 PE=1 SV=1
          Length = 349

 Score =  332 bits (850), Expect(2) = 5e-93
 Identities = 161/188 (85%), Positives = 174/188 (92%)
 Frame = +3

Query: 237 FKFEPIKESIVSREMTRRYMMDMITYADTDXXXXGAGSAGLSCAYEMSKNPNINIAIIEQ 416
           F F+PIKESIVSREMTRRYM DMITYA+TD    GAGSAGLS AYE+SKNPN+ +AIIEQ
Sbjct: 56  FTFDPIKESIVSREMTRRYMTDMITYAETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQ 115

Query: 417 SVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGVEYDEQDTYVVIKHAALFTSTIMSKLLA 596
           SVSPGGGAWLGGQLFSAM+VRKPAH+FLDE+GV YDEQDTYVV+KHAALFTSTIMSKLLA
Sbjct: 116 SVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHAALFTSTIMSKLLA 175

Query: 597 KPNVKLFNAVAAEDLIVKEGKVAGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 776
           +PNVKLFNAVAAEDLIVK  +V GVVTNWALV+ NH TQSCMDPNVMEAKIVVSSCGHDG
Sbjct: 176 RPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDG 235

Query: 777 PFGATGVR 800
           PFGATGV+
Sbjct: 236 PFGATGVK 243



 Score = 31.6 bits (70), Expect(2) = 5e-93
 Identities = 14/15 (93%), Positives = 14/15 (93%)
 Frame = +1

Query: 811 IGMIDSVPGMKALDM 855
           IGMID VPGMKALDM
Sbjct: 248 IGMIDHVPGMKALDM 262


>sp|Q41738|THI41_MAIZE Thiazole biosynthetic enzyme 1-1,
           chloroplastic OS=Zea mays GN=THI1-1 PE=2 SV=1
          Length = 354

 Score =  330 bits (846), Expect(2) = 4e-92
 Identities = 160/188 (85%), Positives = 174/188 (92%)
 Frame = +3

Query: 237 FKFEPIKESIVSREMTRRYMMDMITYADTDXXXXGAGSAGLSCAYEMSKNPNINIAIIEQ 416
           F+F PIKESIVSREMTRRYM DMITYADTD    GAGSAGLSCAYE+SK+P ++IAI+EQ
Sbjct: 62  FRFSPIKESIVSREMTRRYMTDMITYADTDVVIVGAGSAGLSCAYELSKDPAVSIAIVEQ 121

Query: 417 SVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGVEYDEQDTYVVIKHAALFTSTIMSKLLA 596
           SVSPGGGAWLGGQLFSAMVVRKPAH+FLDELGV YDE + YVVIKHAALFTST+MS LLA
Sbjct: 122 SVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVAYDEAEDYVVIKHAALFTSTVMSLLLA 181

Query: 597 KPNVKLFNAVAAEDLIVKEGKVAGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 776
           +PNVKLFNAVA EDLIV+ G+V GVVTNWALVSMNHDTQSCMDPNVMEAK+VVSSCGHDG
Sbjct: 182 RPNVKLFNAVAVEDLIVRGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 241

Query: 777 PFGATGVR 800
           PFGATGV+
Sbjct: 242 PFGATGVK 249



 Score = 30.0 bits (66), Expect(2) = 4e-92
 Identities = 13/15 (86%), Positives = 14/15 (93%)
 Frame = +1

Query: 811 IGMIDSVPGMKALDM 855
           IGMI +VPGMKALDM
Sbjct: 254 IGMISAVPGMKALDM 268


>sp|Q41739|THI42_MAIZE Thiazole biosynthetic enzyme 1-2,
           chloroplastic OS=Zea mays GN=THI1-2 PE=2 SV=1
          Length = 354

 Score =  329 bits (843), Expect(2) = 1e-91
 Identities = 156/188 (82%), Positives = 175/188 (93%)
 Frame = +3

Query: 237 FKFEPIKESIVSREMTRRYMMDMITYADTDXXXXGAGSAGLSCAYEMSKNPNINIAIIEQ 416
           F+F PIKESIVSREMTRRYM DMIT+ADTD    GAGSAGLSCAYE+SK+P +++AI+EQ
Sbjct: 59  FRFSPIKESIVSREMTRRYMTDMITHADTDVVIVGAGSAGLSCAYELSKDPTVSVAIVEQ 118

Query: 417 SVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGVEYDEQDTYVVIKHAALFTSTIMSKLLA 596
           SVSPGGGAWLGGQLFSAMVVR+PAH+FLDELGV YDE + YVV+KHAALFTST+MS+LLA
Sbjct: 119 SVSPGGGAWLGGQLFSAMVVRRPAHLFLDELGVGYDEAEDYVVVKHAALFTSTVMSRLLA 178

Query: 597 KPNVKLFNAVAAEDLIVKEGKVAGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 776
           +PNVKLFNAVA EDLIV+ G+V GVVTNWALVSMNHDTQSCMDPNVMEAK+VVSSCGHDG
Sbjct: 179 RPNVKLFNAVAVEDLIVRRGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 238

Query: 777 PFGATGVR 800
           PFGATGV+
Sbjct: 239 PFGATGVK 246



 Score = 30.0 bits (66), Expect(2) = 1e-91
 Identities = 13/15 (86%), Positives = 14/15 (93%)
 Frame = +1

Query: 811 IGMIDSVPGMKALDM 855
           IGMI +VPGMKALDM
Sbjct: 251 IGMISAVPGMKALDM 265


>sp|P40998|THI2_SCHPO Thiazole biosynthetic enzyme, mitochondrial
           OS=Schizosaccharomyces pombe (strain ATCC 38366 / 972)
           GN=thi2 PE=2 SV=2
          Length = 328

 Score =  254 bits (649), Expect = 6e-67
 Identities = 127/194 (65%), Positives = 154/194 (79%), Gaps = 6/194 (3%)
 Frame = +3

Query: 237 FKFEPIKESIVSREMTRRYMMDMITYADTDXXXXGAGSAGLSCAYEM-SKNPNINIAIIE 413
           F F PI+ES VSR MTRRY  D+  YA++D    GAGSAGL+ AY + ++ P++ IAIIE
Sbjct: 49  FSFAPIRESTVSRAMTRRYFSDLDKYAESDIVIVGAGSAGLTAAYYIGTRRPDLKIAIIE 108

Query: 414 QSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGVEYDEQDTYVVIKHAALFTSTIMSKLL 593
            SV+PGGGAWLGGQLFSAMVVRKPA +FL+E+GV Y+++  YVV+KHAALFTST+M++ L
Sbjct: 109 ASVAPGGGAWLGGQLFSAMVVRKPADLFLNEIGVPYEDEGDYVVVKHAALFTSTVMARTL 168

Query: 594 AKPNVKLFNAVAAEDLIVKEGK-----VAGVVTNWALVSMNHDTQSCMDPNVMEAKIVVS 758
           A PNVKLFNA A EDLIVKEGK     +AGVVTNW LVS+NH  QSCMDPN + A +VVS
Sbjct: 169 ALPNVKLFNATAVEDLIVKEGKDGKQRIAGVVTNWTLVSLNHGLQSCMDPNTINAHLVVS 228

Query: 759 SCGHDGPFGATGVR 800
           + GHDGPFGA  V+
Sbjct: 229 ATGHDGPFGAFCVK 242